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no. not unless you screwed up your engine and honda determined it's because you: 1) didn't tighten the intake manifold down again properly, and something catastrophic happened. 2) forgot to reconnect a vacuum line and something screwed up permanently (which is highly unlikely) 3) dropped something INTO the combustion chamber while you had the intake manifold disconnected, 4) had an issue getting the fuel rail connected and something catastrophic happened (also unlikely).
essentially, unless honda can directly prove that either this IMG, or something associated with it, caused a problem, it can not void your warranty.
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